Well i decided to really examine the motherboard.. and discovered some ports are seriously damaged, so i renabled the controller in the bios and went in windows and disabled the individual ports in the device manager until the ones pictured below had 0 on the multimeter.
Then I put some electrical tape over them, and also the power supply that came with the board I replaced with a spare one I have, and its running normal now f.lux is acting perfectly once again.
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