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When I disable flux for some app I already know that. The notification is very annoying, especially in fullscreen apps.
Yes we are planning to limit it - maybe just once per session.
I will say though that (on the Mac version) people forget and think f.lux is broken.
this one: https://justgetflux.com/flux-setup4-29.exe https://justgetflux.com/news/pages/v4/readme/