Hi Herf, thank you for explaining this! It sounds like for now the 'darkmode-ing' is still best done app-wise, imperfect as this is in Chrome and Office apps (and suboptimal as it is to have to switch to apps for which no dark mode exists altogether). It would be fantastic if at some point a more upstream, lower-level solution were available, perhaps once GPU makers, Windows devs and other devs have code that is more compatible with others.

Hello guys, i come back with BIG News! I managed to fix this issue on my Lenovo y700.
You have to go to Lenovo support page, select your device model and download the latest Intel HD VGA drivers. I had installed a version from 2015 and the latest was from 2016. Unpack the archive but do not run setup because it will fail.
Now go to Device Manager, right-click on Intel HD and choose to upgrade drivers.
Click: Browse My computer - Next - Let me pick from a list of device drivers on my computer - Click on Have Disk -> Browse and open the path where the drivers were unpacked (C:\drivers\Intel VGA Driver\Graphics) and select igdlh64.inf fro x64 OS or igdlh32.inf for X86 OS.
After installation is completed reboot your computer once or twice.
After the first reboot i had a problem with my desktop files missing but it might be due to other things i did to my system. If you encounter this issues just go to C:\windows\system32\config\systemprofile\ and create here a new folder called Desktop. Reboot and everything should be ok.

PS: flux works great after this.

We have noticed that the NVIDIA card handles color profiles wrong on 10.10.5.
This appears to be fixed on 10.11.