f.lux not working immediately upon start up?
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It's only working if I open the F.lux application not automatically
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Did you restart your computer after installing f.lux?
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Having the same problem. Uninstalled-installed flux, problem persists. This is with latest win10 and version 4.111 of flux.
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Do you have any antivirus that could be disabling f.lux?
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This actually looks more like some issue after a Windows update - I recently lost more than just f.lux service.
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Does Task Manager > startup have a lot of things missing or turned off?
If anything Microsoft-related, it's probably in the "defender" or "security" logs.